HL_3JCE_054

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

3JCE|1|A|A|1780, 3JCE|1|A|U|1781, 3JCE|1|A|U|1782, 3JCE|1|A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_054 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1367

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

3JCE|1|A|U|1777
3JCE|1|A|U|1778
3JCE|1|A|U|1779
3JCE|1|A|A|1780
3JCE|1|A|U|1781
3JCE|1|A|U|1782
3JCE|1|A|A|1783
3JCE|1|A|A|1784
3JCE|1|A|A|1785
3JCE|1|A|A|1786
3JCE|1|A|A|1787

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2