HL_3JCJ_110

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCGAAUAGG

Length

9 nucleotides

Bulged bases

3JCJ|1|A|A|613, 3JCJ|1|A|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_110 not in the Motif Atlas

Geometric match to HL_8C3A_015

Geometric discrepancy: 0.3571

The information below is about HL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3JCJ|1|A|C|610
3JCJ|1|A|C|611
3JCJ|1|A|G|612
3JCJ|1|A|A|613
3JCJ|1|A|A|614
3JCJ|1|A|U|615
3JCJ|1|A|A|616
3JCJ|1|A|G|617
3JCJ|1|A|G|618

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4