HL_3JCJ_117

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUAACUAUAACG

Length

13 nucleotides

Bulged bases

3JCJ|1|A|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCJ_117 not in the Motif Atlas

Geometric match to HL_8P9A_160

Geometric discrepancy: 0.2532

The information below is about HL_8P9A_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70658.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3JCJ|1|A|C|1909
3JCJ|1|A|G|1910
3JCJ|1|A|U|1911
3JCJ|1|A|A|1912
3JCJ|1|A|A|1913
3JCJ|1|A|C|1914
3JCJ|1|A|U|1915
3JCJ|1|A|A|1916
3JCJ|1|A|U|1917
3JCJ|1|A|A|1918
3JCJ|1|A|A|1919
3JCJ|1|A|C|1920
3JCJ|1|A|G|1921

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain f

Translation initiation factor IF-2

Chain g

Small subunit ribosomal RNA; SSU rRNA