HL_3JCS_019
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 3JCS|1|1|A|964
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_019 not in the Motif Atlas
- Homologous match to HL_8C3A_021
- Geometric discrepancy: 0.1738
- The information below is about HL_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56443.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
3JCS|1|1|G|961
3JCS|1|1|C|962
3JCS|1|1|G|963
3JCS|1|1|A|964
3JCS|1|1|A|965
3JCS|1|1|A|966
3JCS|1|1|G|967
3JCS|1|1|A|968
3JCS|1|1|C|969
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- ribosomal protein L2
- Chain M
- ribosomal protein L15e
- Chain j
- ribosomal protein L37e
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