HL_3JCS_037
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- U(A2M)UAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 3JCS|1|2|A|384, 3JCS|1|2|A|385, 3JCS|1|2|U|386, 3JCS|1|2|A|390
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_037 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.2922
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
3JCS|1|2|U|381
3JCS|1|2|A2M|382
3JCS|1|2|U|383
3JCS|1|2|A|384
3JCS|1|2|A|385
3JCS|1|2|U|386
3JCS|1|2|U|387
3JCS|1|2|A|388
3JCS|1|2|A|389
3JCS|1|2|A|390
3JCS|1|2|A|391
Current chains
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- ribosomal protein L2
- Chain T
- ribosomal protein L22
- Chain j
- ribosomal protein L37e
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