HL_3JCS_075
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- (A2M)CGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 3JCS|1|1|U|930, 3JCS|1|1|A|934, 3JCS|1|1|A|935
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JCS_075 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.1379
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
3JCS|1|1|A2M|927
3JCS|1|1|C|928
3JCS|1|1|G|929
3JCS|1|1|U|930
3JCS|1|1|G|931
3JCS|1|1|C|932
3JCS|1|1|A|933
3JCS|1|1|A|934
3JCS|1|1|A|935
3JCS|1|1|U|936
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain B
- ribosomal protein L3
- Chain C
- ribosomal protein L4
- Chain T
- ribosomal protein L22
- Chain j
- ribosomal protein L37e
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