HL_3PIO_033

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_033 not in the Motif Atlas

Homologous match to HL_5J7L_167

Geometric discrepancy: 0.1432

The information below is about HL_5J7L_167

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3PIO|1|X|C|1376
3PIO|1|X|G|1377
3PIO|1|X|A|1378
3PIO|1|X|A|1379
3PIO|1|X|C|1380
3PIO|1|X|G|1381

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain U

50S ribosomal protein L28