HL_4CUV_084

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGUAACUAUGACU

Length

13 nucleotides

Bulged bases

4CUV|1|1|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CUV_084 not in the Motif Atlas

Geometric match to HL_8P9A_160

Geometric discrepancy: 0.2724

The information below is about HL_8P9A_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70658.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4CUV|1|1|A|2252
4CUV|1|1|G|2253
4CUV|1|1|U|2254
4CUV|1|1|A|2255
4CUV|1|1|A|2256
4CUV|1|1|C|2257
4CUV|1|1|U|2258
4CUV|1|1|A|2259
4CUV|1|1|U|2260
4CUV|1|1|G|2261
4CUV|1|1|A|2262
4CUV|1|1|C|2263
4CUV|1|1|U|2264

Current chains

Chain 1

25S RRNA

Nearby chains