HL_4D5L_024
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 4D5L|1|1|A|1253
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D5L_024 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.2065
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4D5L|1|1|G|1245
4D5L|1|1|A|1246
4D5L|1|1|C|1247
4D5L|1|1|U|1248
4D5L|1|1|C|1249
4D5L|1|1|A|1250
4D5L|1|1|A|1251
4D5L|1|1|C|1252
4D5L|1|1|A|1253
4D5L|1|1|C|1254
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain Q
- 40S RIBOSOMAL PROTEIN US9
- Chain U
- 40S RIBOSOMAL PROTEIN US10
Coloring options: