HL_4D5Y_021
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 4D5Y|1|2|G|1574, 4D5Y|1|2|U|1575, 4D5Y|1|2|A|1579
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D5Y_021 not in the Motif Atlas
- Homologous match to HL_8P9A_132
- Geometric discrepancy: 0.2296
- The information below is about HL_8P9A_132
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
4D5Y|1|2|A|1572
4D5Y|1|2|C|1573
4D5Y|1|2|G|1574
4D5Y|1|2|U|1575
4D5Y|1|2|G|1576
4D5Y|1|2|C|1577
4D5Y|1|2|A|1578
4D5Y|1|2|A|1579
4D5Y|1|2|A|1580
4D5Y|1|2|U|1581
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain B
- 60S RIBOSOMAL PROTEIN UL3
- Chain C
- 60S RIBOSOMAL PROTEIN UL4
- Chain P
- 60S RIBOSOMAL PROTEIN UL22
- Chain j
- 60S RIBOSOMAL PROTEIN EL37
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