HL_4D5Y_022

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

4D5Y|1|2|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5Y_022 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1785

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4D5Y|1|2|G|1606
4D5Y|1|2|C|1607
4D5Y|1|2|G|1608
4D5Y|1|2|A|1609
4D5Y|1|2|A|1610
4D5Y|1|2|A|1611
4D5Y|1|2|G|1612
4D5Y|1|2|A|1613
4D5Y|1|2|C|1614

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN UL2

Chain N

60S RIBOSOMAL PROTEIN EL15

Chain j

60S RIBOSOMAL PROTEIN EL37