HL_4D5Y_042
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 4D5Y|1|2|G|2773, 4D5Y|1|2|A|2775
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D5Y_042 not in the Motif Atlas
- Homologous match to HL_5TBW_041
- Geometric discrepancy: 0.2444
- The information below is about HL_5TBW_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4D5Y|1|2|C|2769
4D5Y|1|2|G|2770
4D5Y|1|2|C|2771
4D5Y|1|2|A|2772
4D5Y|1|2|G|2773
4D5Y|1|2|C|2774
4D5Y|1|2|A|2775
4D5Y|1|2|G|2776
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain C
- 60S RIBOSOMAL PROTEIN UL4
- Chain P
- 60S RIBOSOMAL PROTEIN UL22
- Chain j
- 60S RIBOSOMAL PROTEIN EL37
- Chain l
- 60S RIBOSOMAL PROTEIN EL39
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