HL_4D67_047
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 4D67|1|2|A|3611, 4D67|1|2|A|3612, 4D67|1|2|U|3613, 4D67|1|2|A|3617
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D67_047 not in the Motif Atlas
- Homologous match to HL_5TBW_046
- Geometric discrepancy: 0.2311
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
4D67|1|2|U|3608
4D67|1|2|U|3609
4D67|1|2|U|3610
4D67|1|2|A|3611
4D67|1|2|A|3612
4D67|1|2|U|3613
4D67|1|2|U|3614
4D67|1|2|A|3615
4D67|1|2|A|3616
4D67|1|2|A|3617
4D67|1|2|A|3618
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain A
- 60S RIBOSOMAL PROTEIN L8
- Chain j
- 60S RIBOSOMAL PROTEIN L37
Coloring options: