HL_4IOA_072
3D structure
- PDB id
- 4IOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAGUGCGUAAUAGCUC
- Length
- 16 nucleotides
- Bulged bases
- 4IOA|1|X|A|1099
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4IOA_072 not in the Motif Atlas
- Homologous match to HL_5J7L_162
- Geometric discrepancy: 0.2108
- The information below is about HL_5J7L_162
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_04775.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4IOA|1|X|G|1098
4IOA|1|X|A|1099
4IOA|1|X|G|1100
4IOA|1|X|U|1101
4IOA|1|X|G|1102
4IOA|1|X|C|1103
4IOA|1|X|G|1104
4IOA|1|X|U|1105
4IOA|1|X|A|1106
4IOA|1|X|A|1107
4IOA|1|X|U|1108
4IOA|1|X|A|1109
4IOA|1|X|G|1110
4IOA|1|X|C|1111
4IOA|1|X|U|1112
4IOA|1|X|C|1113
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain E
- 50S ribosomal protein L6
- Chain F
- 50S ribosomal protein L11
Coloring options: