3D structure

PDB id
4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CGGAUG
Length
6 nucleotides
Bulged bases
4TUB|1|RA|G|2227, 4TUB|1|RA|G|2228, 4TUB|1|RA|U|2230
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4TUB_090 not in the Motif Atlas
Geometric match to HL_5TBW_004
Geometric discrepancy: 0.2154
The information below is about HL_5TBW_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_86929.1
Basepair signature
cWW-F
Number of instances in this motif group
9

Unit IDs

4TUB|1|RA|C|2226
4TUB|1|RA|G|2227
4TUB|1|RA|G|2228
4TUB|1|RA|A|2229
4TUB|1|RA|U|2230
4TUB|1|RA|G|2231

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R1
50S ribosomal protein L28
Chain RD
50S ribosomal protein L2

Coloring options:


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