HL_4TUB_199

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

4TUB|1|YA|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUB_199 not in the Motif Atlas

Geometric match to HL_5TBW_004

Geometric discrepancy: 0.1925

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

4TUB|1|YA|C|2209
4TUB|1|YA|G|2210
4TUB|1|YA|G|2211
4TUB|1|YA|A|2212
4TUB|1|YA|U|2213
4TUB|1|YA|G|2215

Current chains

Chain YA

23S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain Y1

50S ribosomal protein L28

Chain YD

50S ribosomal protein L2

Chain YI

50S ribosomal protein L9