HL_4UG0_049

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

4UG0|1|L5|A|3642, 4UG0|1|L5|A|3643, 4UG0|1|L5|U|3644, 4UG0|1|L5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_049 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.2057

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4UG0|1|L5|U|3639
4UG0|1|L5|U|3640
4UG0|1|L5|U|3641
4UG0|1|L5|A|3642
4UG0|1|L5|A|3643
4UG0|1|L5|U|3644
4UG0|1|L5|U|3645
4UG0|1|L5|A|3646
4UG0|1|L5|A|3647
4UG0|1|L5|A|3648
4UG0|1|L5|A|3649

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S RIBOSOMAL PROTEIN L8

Chain Lj

60S RIBOSOMAL PROTEIN L37