HL_4UJC_042

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

4UJC|1|A2|G|2773, 4UJC|1|A2|A|2775

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_042 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.2443

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4UJC|1|A2|C|2769
4UJC|1|A2|G|2770
4UJC|1|A2|C|2771
4UJC|1|A2|A|2772
4UJC|1|A2|G|2773
4UJC|1|A2|C|2774
4UJC|1|A2|A|2775
4UJC|1|A2|G|2776

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BC

60S RIBOSOMAL PROTEIN L4

Chain BP

60S RIBOSOMAL PROTEIN L17

Chain Bj

60S RIBOSOMAL PROTEIN L37

Chain Bl

60S RIBOSOMAL PROTEIN L39