HL_4UJC_047

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

4UJC|1|A2|A|3611, 4UJC|1|A2|A|3612, 4UJC|1|A2|U|3613, 4UJC|1|A2|A|3617

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_047 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.2312

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4UJC|1|A2|U|3608
4UJC|1|A2|U|3609
4UJC|1|A2|U|3610
4UJC|1|A2|A|3611
4UJC|1|A2|A|3612
4UJC|1|A2|U|3613
4UJC|1|A2|U|3614
4UJC|1|A2|A|3615
4UJC|1|A2|A|3616
4UJC|1|A2|A|3617
4UJC|1|A2|A|3618

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L8

Chain Bj

60S RIBOSOMAL PROTEIN L37