HL_4UJC_141

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

4UJC|1|A2|G|4435

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_141 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.3238

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4UJC|1|A2|A|4434
4UJC|1|A2|G|4435
4UJC|1|A2|C|4436
4UJC|1|A2|A|4437
4UJC|1|A2|G|4438
4UJC|1|A2|A|4439
4UJC|1|A2|A|4440
4UJC|1|A2|U|4441

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BH

60S RIBOSOMAL PROTEIN L9

Chain Bm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40