HL_4UJD_022

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

4UJD|1|A2|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_022 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1784

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4UJD|1|A2|G|1606
4UJD|1|A2|C|1607
4UJD|1|A2|G|1608
4UJD|1|A2|A|1609
4UJD|1|A2|A|1610
4UJD|1|A2|A|1611
4UJD|1|A2|G|1612
4UJD|1|A2|A|1613
4UJD|1|A2|C|1614

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AA

60S RIBOSOMAL PROTEIN L8

Chain AN

60S RIBOSOMAL PROTEIN L15

Chain Aj

60S RIBOSOMAL PROTEIN L37