HL_4UJD_047

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

4UJD|1|A2|A|3611, 4UJD|1|A2|A|3612, 4UJD|1|A2|U|3613, 4UJD|1|A2|A|3617

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_047 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.2311

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4UJD|1|A2|U|3608
4UJD|1|A2|U|3609
4UJD|1|A2|U|3610
4UJD|1|A2|A|3611
4UJD|1|A2|A|3612
4UJD|1|A2|U|3613
4UJD|1|A2|U|3614
4UJD|1|A2|A|3615
4UJD|1|A2|A|3616
4UJD|1|A2|A|3617
4UJD|1|A2|A|3618

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AA

60S RIBOSOMAL PROTEIN L8

Chain Aj

60S RIBOSOMAL PROTEIN L37