HL_4UJD_111

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

4UJD|1|C1|A|1253

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_111 not in the Motif Atlas

Geometric match to HL_4V88_212

Geometric discrepancy: 0.2065

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4UJD|1|C1|G|1245
4UJD|1|C1|A|1246
4UJD|1|C1|C|1247
4UJD|1|C1|U|1248
4UJD|1|C1|C|1249
4UJD|1|C1|A|1250
4UJD|1|C1|A|1251
4UJD|1|C1|C|1252
4UJD|1|C1|A|1253
4UJD|1|C1|C|1254

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain BA

Transfer RNA; tRNA

Chain CQ

40S RIBOSOMAL PROTEIN US9

Chain CU

40S RIBOSOMAL PROTEIN US10