HL_4UJD_114

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

4UJD|1|C1|U|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_114 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.2358

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4UJD|1|C1|G|1366
4UJD|1|C1|U|1367
4UJD|1|C1|U|1368
4UJD|1|C1|A|1369
4UJD|1|C1|A|1370
4UJD|1|C1|U|1371
4UJD|1|C1|U|1372
4UJD|1|C1|C|1373

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CR

40S RIBOSOMAL PROTEIN ES17