HL_4UJE_047

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

4UJE|1|A2|A|3611, 4UJE|1|A2|A|3612, 4UJE|1|A2|U|3613, 4UJE|1|A2|A|3617

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_047 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.2312

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4UJE|1|A2|U|3608
4UJE|1|A2|U|3609
4UJE|1|A2|U|3610
4UJE|1|A2|A|3611
4UJE|1|A2|A|3612
4UJE|1|A2|U|3613
4UJE|1|A2|U|3614
4UJE|1|A2|A|3615
4UJE|1|A2|A|3616
4UJE|1|A2|A|3617
4UJE|1|A2|A|3618

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CA

60S RIBOSOMAL PROTEIN L8

Chain Cj

60S RIBOSOMAL PROTEIN L37