HL_4UJE_107

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

4UJE|1|B1|A|1253

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_107 not in the Motif Atlas

Geometric match to HL_4V88_212

Geometric discrepancy: 0.2065

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4UJE|1|B1|G|1245
4UJE|1|B1|A|1246
4UJE|1|B1|C|1247
4UJE|1|B1|U|1248
4UJE|1|B1|C|1249
4UJE|1|B1|A|1250
4UJE|1|B1|A|1251
4UJE|1|B1|C|1252
4UJE|1|B1|A|1253
4UJE|1|B1|C|1254

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain BQ

40S RIBOSOMAL PROTEIN S16

Chain BU

40S RIBOSOMAL PROTEIN S20