HL_4UY8_005

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UY8_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1646

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4UY8|1|A|U|158
4UY8|1|A|G|159
4UY8|1|A|A|160
4UY8|1|A|A|161
4UY8|1|A|U|162
4UY8|1|A|C|163
4UY8|1|A|C|164
4UY8|1|A|A|165
4UY8|1|A|U|166
4UY8|1|A|A|167
4UY8|1|A|G|168

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain X

50S RIBOSOMAL PROTEIN L28