HL_4UY8_077

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCAUGGGGUGUC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UY8_077 not in the Motif Atlas

Homologous match to HL_7OSM_128

Geometric discrepancy: 0.345

The information below is about HL_7OSM_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25222.2

Basepair signature

cWW-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4UY8|1|V|G|29
4UY8|1|V|U|30
4UY8|1|V|C|31
4UY8|1|V|A|32
4UY8|1|V|U|33
4UY8|1|V|G|34
4UY8|1|V|G|35
4UY8|1|V|G|36
4UY8|1|V|G|37
4UY8|1|V|U|38
4UY8|1|V|G|39
4UY8|1|V|U|40
4UY8|1|V|C|41

Current chains

Chain V

RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA