3D structure

PDB id
4V49 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
8.7 Å

Loop

Sequence
ACUGAAGAU
Length
9 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V49_034 not in the Motif Atlas
Homologous match to HL_6UFM_002
Geometric discrepancy: 0.1568
The information below is about HL_6UFM_002
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_06059.7
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
51

Unit IDs

4V49|1|AV|A|31
4V49|1|AV|C|32
4V49|1|AV|U|33
4V49|1|AV|G|34
4V49|1|AV|A|35
4V49|1|AV|A|36
4V49|1|AV|G|37
4V49|1|AV|A|38
4V49|1|AV|U|39

Current chains

Chain AV
tRNA-Phe

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain AI
30S ribosomal protein S9
Chain AM
30S ribosomal protein S13
Chain AU
mRNA

Coloring options:


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