HL_4V49_082

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

4V49|1|B0|A|1771, 4V49|1|B0|C|1772, 4V49|1|B0|C|1773, 4V49|1|B0|A|1777

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V49_082 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.2824

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_60266.1

Basepair signature

cWW-cWW-tWH-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V49|1|B0|G|1767
4V49|1|B0|U|1768
4V49|1|B0|U|1769
4V49|1|B0|U|1770
4V49|1|B0|A|1771
4V49|1|B0|C|1772
4V49|1|B0|C|1773
4V49|1|B0|A|1774
4V49|1|B0|A|1775
4V49|1|B0|A|1776
4V49|1|B0|A|1777
4V49|1|B0|U|1778
4V49|1|B0|C|1779

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BA

50S ribosomal protein L2