HL_4V4J_026
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GGAUGCAAAC
- Length
- 10 nucleotides
- Bulged bases
- 4V4J|1|w|U|747, 4V4J|1|w|A|751, 4V4J|1|w|A|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4J_026 not in the Motif Atlas
- Homologous match to HL_7RQB_023
- Geometric discrepancy: 0.2023
- The information below is about HL_7RQB_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.6
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V4J|1|w|G|744
4V4J|1|w|G|745
4V4J|1|w|A|746
4V4J|1|w|U|747
4V4J|1|w|G|748
4V4J|1|w|C|749
4V4J|1|w|A|750
4V4J|1|w|A|751
4V4J|1|w|A|752
4V4J|1|w|C|753
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain Q
- 50S ribosomal protein L22
- Chain Y
- 50S ribosomal protein L32
- Chain Z
- 50S ribosomal protein L34
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