HL_4V4J_070

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_070 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.3249

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4V4J|1|w|C|2745
4V4J|1|w|U|2746
4V4J|1|w|G|2747
4V4J|1|w|A|2748
4V4J|1|w|A|2749
4V4J|1|w|A|2750
4V4J|1|w|G|2751
4V4J|1|w|C|2752
4V4J|1|w|A|2753
4V4J|1|w|U|2754
4V4J|1|w|C|2755
4V4J|1|w|U|2756
4V4J|1|w|A|2757
4V4J|1|w|A|2758
4V4J|1|w|G|2759

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain H

50S ribosomal protein L13

Chain b

50S ribosomal protein L36