HL_4V4J_093
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 4V4J|1|y|A|790, 4V4J|1|y|G|791, 4V4J|1|y|A|792, 4V4J|1|y|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4J_093 not in the Motif Atlas
- Homologous match to HL_5J7L_017
- Geometric discrepancy: 0.3376
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
4V4J|1|y|G|786
4V4J|1|y|A|787
4V4J|1|y|U|788
4V4J|1|y|U|789
4V4J|1|y|A|790
4V4J|1|y|G|791
4V4J|1|y|A|792
4V4J|1|y|U|793
4V4J|1|y|A|794
4V4J|1|y|C|795
4V4J|1|y|C|796
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 3
- MRNA
- Chain l
- 30S ribosomal protein S11
- Chain w
- Large subunit ribosomal RNA; LSU rRNA
- Chain z
- Transfer RNA; tRNA
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