3D structure

PDB id
4V4S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the whole ribosomal complex.
Experimental method
X-RAY DIFFRACTION
Resolution
6.76 Å

Loop

Sequence
CCGGGAGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4S_114 not in the Motif Atlas
Geometric match to HL_4V9F_032
Geometric discrepancy: 0.3227
The information below is about HL_4V9F_032
Detailed Annotation
Anticodon loop related
Broad Annotation
Anticodon loop related
Motif group
HL_77082.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
8

Unit IDs

4V4S|1|BA|C|486
4V4S|1|BA|C|487
4V4S|1|BA|G|488
4V4S|1|BA|G|489
4V4S|1|BA|G|491
4V4S|1|BA|A|492
4V4S|1|BA|G|493
4V4S|1|BA|G|494

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BW
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2971 s