HL_4V4V_017

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

4V4V|1|AA|U|793

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_017 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.0918

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V4V|1|AA|G|786
4V4V|1|AA|A|787
4V4V|1|AA|U|788
4V4V|1|AA|U|789
4V4V|1|AA|A|790
4V4V|1|AA|G|791
4V4V|1|AA|A|792
4V4V|1|AA|U|793
4V4V|1|AA|A|794
4V4V|1|AA|C|795
4V4V|1|AA|C|796

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal subunit protein S11

Chain AV

Transfer RNA; tRNA

Chain B0

Large subunit ribosomal RNA; LSU rRNA