HL_4V4V_061

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

4V4V|1|B0|U|747, 4V4V|1|B0|A|751, 4V4V|1|B0|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_061 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.1922

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

4V4V|1|B0|U|744
4V4V|1|B0|G|745
4V4V|1|B0|U|746
4V4V|1|B0|U|747
4V4V|1|B0|G|748
4V4V|1|B0|A|749
4V4V|1|B0|A|750
4V4V|1|B0|A|751
4V4V|1|B0|A|752
4V4V|1|B0|A|753

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L22