HL_4V4V_068

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_068 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1271

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V4V|1|B0|C|1092
4V4V|1|B0|G|1093
4V4V|1|B0|U|1094
4V4V|1|B0|A|1095
4V4V|1|B0|A|1096
4V4V|1|B0|U|1097
4V4V|1|B0|A|1098
4V4V|1|B0|G|1099

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L11