HL_4V4V_069

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGUUAUGCG

Length

9 nucleotides

Bulged bases

4V4V|1|B0|U|1176

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_069 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.1069

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V4V|1|B0|C|1170
4V4V|1|B0|G|1171
4V4V|1|B0|U|1173
4V4V|1|B0|U|1174
4V4V|1|B0|A|1175
4V4V|1|B0|U|1176
4V4V|1|B0|G|1177
4V4V|1|B0|C|1178
4V4V|1|B0|G|1179

Current chains

Chain B0

23S ribosomal RNA

Nearby chains