HL_4V4W_006

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

4V4W|1|AA|G|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0872

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4W|1|AA|G|259
4V4W|1|AA|G|260
4V4W|1|AA|U|261
4V4W|1|AA|A|262
4V4W|1|AA|A|263
4V4W|1|AA|C|264
4V4W|1|AA|G|265
4V4W|1|AA|G|266
4V4W|1|AA|C|267

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S ribosomal subunit protein S17

Chain AT

30S ribosomal subunit protein S20