HL_4V4W_081

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

4V4W|1|B0|U|1782, 4V4W|1|B0|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_081 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.2169

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V4W|1|B0|U|1777
4V4W|1|B0|U|1778
4V4W|1|B0|U|1779
4V4W|1|B0|A|1780
4V4W|1|B0|U|1781
4V4W|1|B0|U|1782
4V4W|1|B0|A|1783
4V4W|1|B0|A|1784
4V4W|1|B0|A|1785
4V4W|1|B0|A|1786
4V4W|1|B0|A|1787

Current chains

Chain B0

23S ribosomal RNA

Nearby chains