HL_4V5A_162

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCGAACAGG

Length

9 nucleotides

Bulged bases

4V5A|1|DA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5A_162 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.37

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_87306.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V5A|1|DA|C|640
4V5A|1|DA|C|641
4V5A|1|DA|G|642
4V5A|1|DA|A|643
4V5A|1|DA|A|644
4V5A|1|DA|C|645
4V5A|1|DA|A|646
4V5A|1|DA|G|647
4V5A|1|DA|G|648

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D6

50S RIBOSOMAL PROTEIN L33

Chain D8

50S RIBOSOMAL PROTEIN L35

Chain DP

50S RIBOSOMAL PROTEIN L15