HL_4V5B_007
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- UGAAUCCAUAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5B_007 not in the Motif Atlas
- Homologous match to HL_5J7L_138
- Geometric discrepancy: 0.3052
- The information below is about HL_5J7L_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68257.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V5B|1|AB|U|158
4V5B|1|AB|G|159
4V5B|1|AB|A|160
4V5B|1|AB|A|161
4V5B|1|AB|U|162
4V5B|1|AB|C|163
4V5B|1|AB|C|164
4V5B|1|AB|A|165
4V5B|1|AB|U|166
4V5B|1|AB|A|167
4V5B|1|AB|G|168
Current chains
- Chain AB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain AZ
- 50S RIBOSOMAL PROTEIN L31
- Chain DA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DD
- 30S RIBOSOMAL PROTEIN S4
Coloring options: