HL_4V5B_031

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GCUUAUGC

Length

8 nucleotides

Bulged bases

4V5B|1|AB|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_031 not in the Motif Atlas

Geometric match to HL_5TBW_015

Geometric discrepancy: 0.3812

The information below is about HL_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5B|1|AB|G|1171
4V5B|1|AB|C|1172
4V5B|1|AB|U|1173
4V5B|1|AB|U|1174
4V5B|1|AB|A|1175
4V5B|1|AB|U|1176
4V5B|1|AB|G|1177
4V5B|1|AB|C|1178

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains