HL_4V5B_042

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

4V5B|1|AB|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_042 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.2319

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V5B|1|AB|A|1630
4V5B|1|AB|G|1631
4V5B|1|AB|A|1632
4V5B|1|AB|G|1633
4V5B|1|AB|A|1634
4V5B|1|AB|A|1635
4V5B|1|AB|U|1636

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains