HL_4V5B_130

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_130 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.3481

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V5B|1|CB|C|1092
4V5B|1|CB|G|1093
4V5B|1|CB|U|1094
4V5B|1|CB|A|1095
4V5B|1|CB|A|1096
4V5B|1|CB|U|1097
4V5B|1|CB|A|1098
4V5B|1|CB|G|1099

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C4

50S RIBOSOMAL PROTEIN L36

Chain CG

50S RIBOSOMAL PROTEIN L6

Chain CI

50S RIBOSOMAL PROTEIN L11