HL_4V5B_197

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

4V5B|1|DA|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_197 not in the Motif Atlas

Homologous match to HL_5J7L_029

Geometric discrepancy: 0.3002

The information below is about HL_5J7L_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5B|1|DA|G|1356
4V5B|1|DA|A|1357
4V5B|1|DA|U|1358
4V5B|1|DA|C|1359
4V5B|1|DA|A|1360
4V5B|1|DA|G|1361
4V5B|1|DA|A|1362
4V5B|1|DA|A|1363
4V5B|1|DA|U|1364
4V5B|1|DA|G|1365
4V5B|1|DA|C|1366

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DI

30S RIBOSOMAL PROTEIN S9

Chain DJ

30S RIBOSOMAL PROTEIN S10

Chain DN

30S RIBOSOMAL PROTEIN S14