HL_4V5B_234
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- CUGAGAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5B_234 not in the Motif Atlas
- Geometric match to HL_4V9F_032
- Geometric discrepancy: 0.2994
- The information below is about HL_4V9F_032
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V5B|1|DA|C|295
4V5B|1|DA|U|296
4V5B|1|DA|G|297
4V5B|1|DA|A|298
4V5B|1|DA|G|299
4V5B|1|DA|A|300
4V5B|1|DA|G|301
4V5B|1|DA|G|302
Current chains
- Chain DA
- 16S RIBOSOMAL RNA
Nearby chains
- Chain DD
- 30S RIBOSOMAL PROTEIN S4
- Chain DE
- 30S RIBOSOMAL PROTEIN S5
- Chain DL
- 30S RIBOSOMAL PROTEIN S12
- Chain DQ
- 30S RIBOSOMAL PROTEIN S17
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