HL_4V5M_006

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4V5M|1|AA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.092

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V5M|1|AA|G|259
4V5M|1|AA|G|260
4V5M|1|AA|U|261
4V5M|1|AA|A|262
4V5M|1|AA|A|263
4V5M|1|AA|U|264
4V5M|1|AA|G|265
4V5M|1|AA|G|266
4V5M|1|AA|C|267

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AQ

30S RIBOSOMAL PROTEIN S17

Chain AT

30S RIBOSOMAL PROTEIN S20