HL_4V5M_057

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

4V5M|1|BA|U|747, 4V5M|1|BA|A|751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_057 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.1035

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

4V5M|1|BA|G|744
4V5M|1|BA|G|745
4V5M|1|BA|A|746
4V5M|1|BA|U|747
4V5M|1|BA|G|748
4V5M|1|BA|C|749
4V5M|1|BA|A|750
4V5M|1|BA|A|751
4V5M|1|BA|A|752
4V5M|1|BA|C|753

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S RIBOSOMAL PROTEIN L32

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BW

50S RIBOSOMAL PROTEIN L22