HL_4V5O_006

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GAUGAAUC

Length

8 nucleotides

Bulged bases

4V5O|1|AA|U|246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5O_006 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1252

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V5O|1|AA|G|240
4V5O|1|AA|A|241
4V5O|1|AA|U|242
4V5O|1|AA|G|243
4V5O|1|AA|A|244
4V5O|1|AA|A|245
4V5O|1|AA|U|246
4V5O|1|AA|C|247

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AQ

RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN

Chain AW

40S RIBOSOMAL PROTEIN S4

Chain AY

RPS6E